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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16043556_16043866_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16043556 - 16043866
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATCTTAAAT
Flanking Amino Acid:
YDAIEGGGLMATPHPSPAPP
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.5
36.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.4
0.64
0.8
70.3
35.3
Minor 5ss
42.2
-0.9
3.4
56.2
48
Minor BPS
69.2
0.68
1.4
81.61
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014456
16031437 - 16051011
19575