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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16043556_16045139_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16043556 - 16045139
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATCTTAAAT
Flanking Amino Acid:
PLLNSAANQEATPHPSPAPP
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.4
0.64
0.8
70.3
35.3
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
69.2
0.68
1.4
81.61
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039524
16031437 - 16051011
19575