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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16043945_16045139_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16043945 - 16045139
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
PLLNSAANQEGDATSAASDG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
0.9
72.8
35.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014456
16031437 - 16051011
19575