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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16046977_16050941_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16046977 - 16050941
Intron Length:
3965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GACTTTTTAAAG
Flanking Amino Acid:
QGTGRQPYSNGPVQNQMMHS
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.9
0.81
0.6
85.6
21.5
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
54.8
0.01
1.5
53.89
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039524
16031437 - 16051011
19575
ENSAPLT00000014456
16031437 - 16051011
19575