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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16061458_16062229_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16061458 - 16062229
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TGTGTATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GAGAACATAATT
Flanking Amino Acid:
LGQHVPTLHPTSEELTIAGM
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.1
0.61
0.9
74.4
40.4
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
47
-0.1
1.8
61.22
41.9

Associated Gene:

Gene:
SAR1B
Ensembl Gene ID:
ENSAPLG00000007369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007647
16057058 - 16064449
7392