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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16062296_16062868_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16062296 - 16062868
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATA
Flanking Amino Acid:
TTFDLGGHAQARRVWKNYLP
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.3
0.59
0.8
70.9
29.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
63
0.4
2
80.44
35.6

Associated Gene:

Gene:
SAR1B
Ensembl Gene ID:
ENSAPLG00000007369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007647
16057058 - 16064449
7392