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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16062973_16063451_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16062973 - 16063451
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTGAAATAATC
Flanking Amino Acid:
RLLESKEELDSLMTDETIAN
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81.6
0.71
0.7
76.9
25.1
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
44.2
-0.4
2
57.3
41.4

Associated Gene:

Gene:
SAR1B
Ensembl Gene ID:
ENSAPLG00000007369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007647
16057058 - 16064449
7392