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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16063584_16064332_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16063584 - 16064332
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATACCATAATT
Flanking Amino Acid:
FGLYGQTTGKGSIPLKELNA
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.2
0.66
0.9
73
37.3
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
61.5
0.44
1.7
76.34
39.6

Associated Gene:

Gene:
SAR1B
Ensembl Gene ID:
ENSAPLG00000007369
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007647
16057058 - 16064449
7392