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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16090004_16093106_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16090004 - 16093106
Intron Length:
3103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TAAAAAATGCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTTTCCTAAAAA
Flanking Amino Acid:
MKLIEKDLYPEQTGKKTKGK
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
51.2
0.03
1.2
41.3
46.5
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
72.7
0.71
1.7
84.76
35

Associated Gene:

Gene:
JADE2
Ensembl Gene ID:
ENSAPLG00000014696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015321
16087145 - 16125085
37941