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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16093225_16096034_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16093225 - 16096034
Intron Length:
2810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
CCTGCCTAAACG
Flanking Amino Acid:
FTHLRQDLERVRNLCYMVTR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
78.7
0.65
0.8
73.9
36.8
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
54
-0
1.9
58.33
49.3

Associated Gene:

Gene:
JADE2
Ensembl Gene ID:
ENSAPLG00000014696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015321
16087145 - 16125085
37941