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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_160967_162738_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160967 - 162738
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTGTTTTTTACA
Flanking Amino Acid:
MKTVLMLADQMISRIEYVHT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
64.3
0.44
1.6
74.12
37.8

Associated Gene:

Gene:
CSNK1A1
Ensembl Gene ID:
ENSAPLG00000010571
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011075
148311 - 175805
27495