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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16101553_16102318_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16101553 - 16102318
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CAGGTATTGACT
Flanking Amino Acid:
HVSCALWIPEVSIGCPEKME
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
72.3
0.5
1
64.7
41.3
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
47.6
-0.1
1.7
60.02
43.8

Associated Gene:

Gene:
JADE2
Ensembl Gene ID:
ENSAPLG00000014696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015321
16087145 - 16125085
37941