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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16102487_16105638_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16102487 - 16105638
Intron Length:
3152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCGTCCTAACCA
Flanking Amino Acid:
CDKCNVCVHQACYGILKVPI
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
73.6
0.53
1
68.3
37.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
54.3
0.13
2
66.48
46.2

Associated Gene:

Gene:
JADE2
Ensembl Gene ID:
ENSAPLG00000014696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015321
16087145 - 16125085
37941