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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16113758_16124870_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16113758 - 16124870
Intron Length:
11113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAACC
Flanking Amino Acid:
SAEAIPQPVVRIIPQLENSP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.2
0.79
0.7
76.8
31.9
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
71.3
0.65
1.5
78.1
37.8

Associated Gene:

Gene:
JADE2
Ensembl Gene ID:
ENSAPLG00000014696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015321
16087145 - 16125085
37941