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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16190370_16191023_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16190370 - 16191023
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TTTGTCTCACTT
Flanking Amino Acid:
DVSSILTSIQSLLDEPNPNS
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
84.8
0.78
0.7
79.2
26.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
51.4
0.12
1.9
75.15
42.4

Associated Gene:

Gene:
UBE2B
Ensembl Gene ID:
ENSAPLG00000014846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020680
16190241 - 16194237
3997
ENSAPLT00000015468
16190241 - 16194757
4517