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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16193403_16194156_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16193403 - 16194156
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTAAACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
NIMQWNAVIFGPEGTPFEDG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.1
0.56
0.9
70.6
40.5
Minor 5ss
32.6
-2
3.4
40.6
45.1
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
UBE2B
Ensembl Gene ID:
ENSAPLG00000014846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015468
16190241 - 16194757
4517