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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16238535_16238728_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16238535 - 16238728
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTAACTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCACGTCTAACT
Flanking Amino Acid:
LPLTALVDGQIFCLHGGLSP
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
75.3
0.57
0.9
65.7
40.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
47.3
-0.1
2.1
66.76
43.8

Associated Gene:

Gene:
PPP2CA
Ensembl Gene ID:
ENSAPLG00000014864
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015498
16226087 - 16241015
14929