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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16239421_16240164_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16239421 - 16240164
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAAGA
Flanking Amino Acid:
VSRAHQLVMEGYNWCHDRNV
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.6
81.6
30.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
55.5
0.17
2.2
76.36
40.9

Associated Gene:

Gene:
PPP2CA
Ensembl Gene ID:
ENSAPLG00000014864
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015498
16226087 - 16241015
14929