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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16240284_16240942_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16240284 - 16240942
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GTGTGCTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GTTTGATTAATA
Flanking Amino Acid:
MELDDTLKYSFLQFDPAPRR
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
77.4
0.62
1
73.4
41.9
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
58.3
0.26
2
73.34
38.5

Associated Gene:

Gene:
PPP2CA
Ensembl Gene ID:
ENSAPLG00000014864
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015498
16226087 - 16241015
14929