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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1624289_1628106_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1624289 - 1628106
Intron Length:
3818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATT
Flanking Amino Acid:
SLLLNALTERSYGQTSSQDE
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.1
0.7
0.9
78.2
39.7
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
GABRA1
Ensembl Gene ID:
ENSAPLG00000013482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023863
1623605 - 1661226
37622
ENSAPLT00000014100
1621653 - 1661226
39574