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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16253067_16255495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16253067 - 16255495
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
GATTGCTTAGTC
Flanking Amino Acid:
QSVTIKTMLEDLGMDDEGDD
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
52
0.04
2
64.38
41.3

Associated Gene:

Gene:
SKP1
Ensembl Gene ID:
ENSAPLG00000015147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015785
16252970 - 16258450
5481