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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16255570_16256790_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16255570 - 16256790
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
AAACTATAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAAACTATAATT
Flanking Amino Acid:
PNVNAAILKKVIQWCTHHKD
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
52.1
0.05
1
50.1
42.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
51.8
0.13
1.6
66.52
37.8

Associated Gene:

Gene:
SKP1
Ensembl Gene ID:
ENSAPLG00000015147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015785
16252970 - 16258450
5481