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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16256935_16257504_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16256935 - 16257504
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGGCTTTAAAT
Flanking Amino Acid:
DQGTLFELILAANYLDIKGL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
77.1
37.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.2
0.59
0.9
69.1
36.1
Minor 5ss
36.2
-1.6
2.6
40.8
39.1
Minor BPS
58.4
0.34
1.5
68.61
42.2

Associated Gene:

Gene:
SKP1
Ensembl Gene ID:
ENSAPLG00000015147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015785
16252970 - 16258450
5481