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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16275046_16275245_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16275046 - 16275245
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTGCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCCACTGACT
Flanking Amino Acid:
KQEMEHYDRNMKPQPEPKRE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
57.9
0.18
1.1
56
39.1
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
47.2
-0.1
2
66.88
43.6

Associated Gene:

Gene:
TCF7
Ensembl Gene ID:
ENSAPLG00000015177
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047097
16264808 - 16327533
62726
ENSAPLT00000039867
16264808 - 16327533
62726
ENSAPLT00000015826
16269124 - 16327533
58410