Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16279630_16281323_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16279630 - 16281323

Intron Length:

1694

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTCAC

U12 Branch Point Sequence:

TCCAGCTCACCT

Flanking Amino Acid:

HLPADINQKQGVHRPSQTSD

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

33.2

Major BPS

0.28

1.1

63.1

35.8

Major PPT

79.6

0.67

0.7

72.1

32.5

Minor 5ss

24.1

-3

3.2

29.7

43.3

Minor BPS

43.4

-0.4

2.2

60.31

48.9

Associated Gene:

Gene:

TCF7

Ensembl Gene ID:

ENSAPLG00000015177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047097

16264808 - 16327533

62726

ENSAPLT00000039867

16264808 - 16327533

62726

ENSAPLT00000015826

16269124 - 16327533

58410