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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1628220_1637708_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1628220 - 1637708
Intron Length:
9489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACTGTCCTAATT
Flanking Amino Acid:
YDNRLRPGLGERVTEVKTDI
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78
26.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
71.6
0.49
0.9
70
35.2
Minor 5ss
40.2
-1.1
2.7
48.5
47.7
Minor BPS
53.2
0.18
1.8
70.09
41.5

Associated Gene:

Gene:
GABRA1
Ensembl Gene ID:
ENSAPLG00000013482
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023863
1623605 - 1661226
37622
ENSAPLT00000014100
1621653 - 1661226
39574