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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16327231_16327338_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16327231 - 16327338
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TCCTCCCCATGC
Flanking Amino Acid:
GSPAAAADPEAIRRVQDPQR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
72.1
0.5
0.9
65.7
29.1
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
40.4
-0.7
2.2
50.79
46

Associated Gene:

Gene:
TCF7
Ensembl Gene ID:
ENSAPLG00000015177
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047097
16264808 - 16327533
62726
ENSAPLT00000015826
16269124 - 16327533
58410