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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16412558_16413411_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16412558 - 16413411
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATATATTT
Flanking Amino Acid:
DLKTKSENGLEFTSSGSANS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.9
0.56
0.7
72.7
25.6
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
45.6
-0.2
1.9
65.18
39.4

Associated Gene:

Gene:
VDAC1
Ensembl Gene ID:
ENSAPLG00000015267
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015932
16411842 - 16421299
9458