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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16413565_16413654_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16413565 - 16413654
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGATTATAAATC
Flanking Amino Acid:
LGTEITLEDQLARGLKLTFD
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
48.6
-0.1
1.9
60.67
38.6

Associated Gene:

Gene:
VDAC1
Ensembl Gene ID:
ENSAPLG00000015267
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015932
16411842 - 16421299
9458