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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16413708_16415486_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16413708 - 16415486
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
ACGAGATTATTT
Flanking Amino Acid:
TFDSSFSPNTGKKSAKVKTG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
86.3
0.82
0.6
85.5
21.9
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
40.1
-0.6
2.1
51.74
43.2

Associated Gene:

Gene:
VDAC1
Ensembl Gene ID:
ENSAPLG00000015267
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015932
16411842 - 16421299
9458