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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16415715_16418791_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16415715 - 16418791
Intron Length:
3077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATATTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTAAAACT
Flanking Amino Acid:
KTDEFQLHTNVNDGTEFGGS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
70.7
40.3
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
48.7
-0
1.9
69.02
42.2

Associated Gene:

Gene:
VDAC1
Ensembl Gene ID:
ENSAPLG00000015267
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015932
16411842 - 16421299
9458