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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16419492_16420330_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16419492 - 16420330
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
GLGYTQTLKPGIKLTLSALL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86
0.81
0.7
80.7
30
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
VDAC1
Ensembl Gene ID:
ENSAPLG00000015267
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015932
16411842 - 16421299
9458