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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16427063_16428312_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16427063 - 16428312
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATTCTGAAAG
Flanking Amino Acid:
VYVTYHNKRKIFLLVQSRRW
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
53.4
-0
1.7
58.15
43.1

Associated Gene:

Gene:
C5orf15
Ensembl Gene ID:
ENSAPLG00000016800
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038906
16423191 - 16428785
5595