Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1646014_1650314_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1646014 - 1650314

Intron Length:

4301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTTTA

5'SS Class:

major

3'SS Sequence:

CGTTTTAAATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTCGTTTTAAAT

Flanking Amino Acid:

VHACPLKFGSYAYTRAEVVY

Intron Amino Acid Position:

311

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

77.4

33.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

64.5

0.33

64.6

40.4

Minor 5ss

46.7

-0.3

2.8

68.1

42.7

Minor BPS

62.1

0.46

1.5

75.95

41.3

Associated Gene:

Gene:

GABRA1

Ensembl Gene ID:

ENSAPLG00000013482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023863

1623605 - 1661226

37622

ENSAPLT00000014100

1621653 - 1661226

39574