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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16729724_16733927_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16729724 - 16733927
Intron Length:
4204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACTTTACAT
Flanking Amino Acid:
RRLSSSELAQLMEQEDLDDD
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.5
0.69
0.8
75.8
32.8
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
61.8
0.45
1.8
81.86
39.5

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016166
16628335 - 16829729
201395
ENSAPLT00000029454
16628335 - 16829729
201395