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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16812610_16813590_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16812610 - 16813590
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
PKLSKQLTLLANGSELHISS
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.9
0.74
0.8
76.3
32.4
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029454
16628335 - 16829729
201395
ENSAPLT00000016166
16628335 - 16829729
201395