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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16813726_16815165_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16813726 - 16815165
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGCTGA
5'SS Class:
weak_major
3'SS Sequence:
TCTGATGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTTCCCAATT
Flanking Amino Acid:
LFIEDSARKTLANILWREEG
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
57.2
44.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
72.6
0.51
1
65.5
40.7
Minor 5ss
45.1
-0.5
2.9
60
44.9
Minor BPS
49.5
0.04
1.9
69.24
41.9

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029454
16628335 - 16829729
201395