About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16813726_16820269_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16813726 - 16820269
Intron Length:
6544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGCTGA
5'SS Class:
weak_major
3'SS Sequence:
ATCCCCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCC
Flanking Amino Acid:
LFIEDSARKTRLSVGNMFYV
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
57.2
44.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
64.3
0.32
1
60.6
34.9
Minor 5ss
45.1
-0.5
2.9
60
44.9
Minor BPS
77.1
0.83
1.5
86.09
32

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016166
16628335 - 16829729
201395