About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16815193_16820269_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16815193 - 16820269
Intron Length:
5077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCAG
5'SS Class:
major
3'SS Sequence:
ATCCCCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCC
Flanking Amino Acid:
TLANILWREEGLSVGNMFYV
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.5
45
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
64.3
0.32
1
60.6
34.9
Minor 5ss
29.1
-2.4
3.4
38.3
46.7
Minor BPS
77.1
0.83
1.5
86.09
32

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029454
16628335 - 16829729
201395