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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16820389_16821910_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16820389 - 16821910
Intron Length:
1522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
RPEERIFTSYEEICPRVEGE
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029454
16628335 - 16829729
201395
ENSAPLT00000016166
16628335 - 16829729
201395