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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16822061_16822676_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16822061 - 16822676
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTACA
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
IDIQTQKAIQSLDVDPLPTK
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
71.8
39.9
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
40.5
-1.1
2.8
52.7
43.9
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
FSTL4
Ensembl Gene ID:
ENSAPLG00000015488
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029454
16628335 - 16829729
201395
ENSAPLT00000016166
16628335 - 16829729
201395