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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16915269_16919074_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16915269 - 16919074
Intron Length:
3806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTCCTTTAACA
Flanking Amino Acid:
VTSSTEKGLIVYCVTSPKKD
Intron Amino Acid Position:
1545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
75.2
0.57
1
69.3
41.7
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
78.2
0.88
1.1
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499