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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16919587_16921531_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16919587 - 16921531
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGACGA
5'SS Class:
major
3'SS Sequence:
TTTCCAACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTTCCAACT
Flanking Amino Acid:
PLTDYGQPCPGWSITRPALI
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
58.7
42.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.9
0.63
0.9
71.4
33.1
Minor 5ss
25.4
-2.8
2.8
22.1
37
Minor BPS
53.1
0.17
1.9
76.27
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499
ENSAPLT00000046385
16913322 - 17031820
118499