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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16926298_16927544_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16926298 - 16927544
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
ATTGTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TATGTAGTAAAT
Flanking Amino Acid:
KGLTKDHVTFSTGSPQKSLS
Intron Amino Acid Position:
1216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
68
0.45
1
57.8
39
Major PPT
75.4
0.57
0.9
70
40.8
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
44.2
-0.3
2.3
67.08
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499