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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16927737_16930087_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16927737 - 16930087
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTCCATAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCATAACA
Flanking Amino Acid:
SLQCEPAYSTLTKNLSERRG
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.3
68
42.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.9
74.8
33.4
Minor 5ss
37.6
-1.4
2.6
44.6
36.9
Minor BPS
82.6
1.02
1.4
92.8
26.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499