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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16930309_16934874_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16930309 - 16934874
Intron Length:
4566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
AGAGCCAAAAAT
Flanking Amino Acid:
NMDPAVMFRQRSLSQGSTNS
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
75.7
35.3
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
41.7
-0.9
2.8
56.4
48
Minor BPS
43.3
-0.4
2
58.58
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499