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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16932860_16934874_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16932860 - 16934874
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCAAT
5'SS Class:
major
3'SS Sequence:
CTCTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCTTGCTTACAG
Flanking Amino Acid:
NMDPAVMFRQRKKRWRSLGS
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
75.7
35.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82
0.72
0.8
75.5
33.1
Minor 5ss
41.7
-0.9
2.8
56.4
48
Minor BPS
48.7
-0.2
2.2
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499