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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16938465_16939612_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16938465 - 16939612
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
CATTTGTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTCTCTCTAACA
Flanking Amino Acid:
KLADRIQLNGRYYLKNNMET
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.4
38.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73.8
0.54
0.9
68.4
37.1
Minor 5ss
29.3
-2.4
3.6
39
46.4
Minor BPS
63.7
0.43
1.7
72.69
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499