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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16943111_16943427_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16943111 - 16943427
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ACCTATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
ACACACCTAATC
Flanking Amino Acid:
RFSILPPKLFSDGSVSQSQD
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.9
34.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
78.9
0.65
0.9
72.6
36.6
Minor 5ss
34.2
-1.8
2.8
40.2
45.9
Minor BPS
46.3
-0.3
1.8
53.23
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499
ENSAPLT00000046385
16913322 - 17031820
118499