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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16943672_16945604_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16943672 - 16945604
Intron Length:
1933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTCTTCTTACAG
Flanking Amino Acid:
LSITVKTNIFVFKELLCRIG
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
88.8
0.87
0.6
83.5
24.9
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
49.7
-0.1
1.8
55.39
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015846
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046385
16913322 - 17031820
118499
ENSAPLT00000032102
16913322 - 17031820
118499
ENSAPLT00000016587
16913322 - 17031820
118499